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Community acquired pneumonia (CAP) is a very common, yet infectious and sometimes lethal disease. Therefor, this disease is connected to high costs of diagnosis and treatment. To actually reduce the costs for health care in this matter, diagnosis and treatment must get cheaper to conduct with no loss in predictive accuracy. One effective way in doing so would be the identification of easy detectable and highly specific transcriptomic markers, which would reduce the amount of work required for laboratory tests by possibly enhanced diagnosis capability.
Transcriptomic whole blood data, derived from the PROGRESS study was combined with several documented features like age, smoking status or the SOFA score. The analysis pipeline included processing by self organizing maps for dimensionality and noise reduction, as well as diffusion pseudotime (DPT). Pseudotime enabled modelling a disease run of CAP, where each sample represented a state/time in the modelled run. Both methods combined resulted in a proposed disease run of CAP, described by 1476 marker genes. The additional conduction of a geneset analysis also provided information about the immune related functions of these marker genes.
Path decomposition of a graph has received an important amount of interest over the past decades because of its applications in algorithmic graph theory and in real life problems. For the computation of a path decomposition of small width, we use different heuritics approaches. One of the most useful method is by Bodlaender and Kloks. In this thesis, we focus on the computation, applications, transformation and approximation of a path decomposition of small width.
It is easy to convert a path decomposition in to nice path decomposition with same width, which is more convinent to use to find the graph parameters like independent sets, chromatic polynomials etc. Inspired by [28], we find an algorithm to compute the chromatic polynomial of a graph via nice path decomposition with small width.
In the context of globalization and the internationalization of international markets, mergers and acquisitions are becoming increasingly important for transnational corporations and national economies of countries as a form of internationalization, integration and the way to attract foreign investment. In the framework of this paper, the theoretical aspects of mergers and acquisitions have been analyzed, and the experience of Germany, China and Russia in attracting investments through mergers and acquisitions has been examined, and the success of this method for each country has been assessed.
Soft Learning Vector Quantisation (SLVQ) andRobust Soft Learning Vector Quantisation (RSLVQ) are supervised data classification methods, that have been applied successfully to real world classification problems. The performance of SLVQ and RSLVQ, however, reduces, when they are applied tomore complicated classification problems. In this thesis, we have introducedmodi-fications to SLVQand RSLVQ, in order to havemore capable versions of them. A few possibilities to modify SLVQ and RSLVQ are considered, some of them are not successful enough and they have been included for the sake of completeness. The fruits of the thesis are plenty, including Tangent Soft Learning Vector Quantisation-Strong (TSLVQ-S), together with its more stable version Tangent Robust Soft Learning Vector Quantisation-Strong (TRSLVQ-S), Attraction Soft Learning Vector Quantisation (ASLVQ) and Grassmannian Soft Learning Vector Quantisation (GSLVQ).
This thesis focuses on the introduction of a process for the fracture toughness testing of epoxy resin systems, in the light of the linear elastic fracture mechanic approach. Based on the requirements of ISO 13586, SENB-specimen were designed and especially the precracking process was analysed and the tapping process was optimized by designing and testing a drop-weight device. After successful validating the test process using specimen made of Araldite LY556, the in uence of GNP loading on the fracture toughness was analysed. The pure epoxy showed a KIc of 0.73 MPap
m, being perfectly in line with the manufacturers datasheet. A peak in fracture toughness of 0.83 MPap
m was archived at 1 wt% and a loading rate of 10 mm/min, showing a decreasing trend as the loading is increased further. As the loading rate is increased, the fracture toughness reduces slightly for 0.5 wt% and 2 wt% GNP, but
drops signicantly for 1 wt% GNP obliterating the peak. The load vs. displacement curves showed quasi-brittle material behaviour. The fracture surfaces were analysed using SEM and while the neat resin did not show any features, did the reinforced samples show pattern of crack pinning in connection with bridging and pull-out. The resulting improvement is less signicant as observed by other researchers for larger GNPs. This is in line with the general idea, that small particles are not able to yield as high improvements, but the signicant decrease for higher loading rates is not observed or described so far. It is suspected that tests at lower loading rates (e.g. 1 or 0.5 mm/min) show an even higher fracture toughness.
In this work, we discuss the key role that “conflict minerals” (Gold, Coltan, Cobalt, Tin, Tungsten) play in global supply chains and high-technology industries, and the issues surrounding their extraction and trade in origin
countries, particularly in the African Congo Basin and the Great Lakes Region. We discuss ongoing international efforts to combat violence, child labour and human rights violations at mineral extraction areas, particularly in the Democratic Republic of the Congo (DRC), where very large mineral reserves have been discovered. We present the OECD Due Diligence Guidance for Responsible Supply Chains of Minerals from Conflict-Affected and High-Risk Areas, and the
GOTS MineralTrace mineral proof-of-origin and trade chain certification solution developed by ibes AG in Germany, which automates and simplifies the implementation of the OECD Guidance. We discuss a pilot project in DRC involving the GOTS GoldTrace application, based on the MineralTrace platform. We point out MineralTrace’s benefits and its limitations. We analyse possible solutions to said limitations, including an analysis of blockchain-based transactional information exchange and record keeping systems, and finally we propose a new MineralTrace Application Programming Interface (API) that solves current limitations, introduces configuration flexibility for client applications, introduces workflow flexibility to adapt MineralTrace to any country or region, and simplifies data export functionality.
Internationalization and business expansion appear to be the most challenging processes in business conduction today. Every step of the foreign market entry process and overseas operations establishment is full of obvious risks and hidden pitfalls. Theoretical background, multiplied with the vital practice, is playing the key role in such a complicated business process; such information can be used as a guideline by further market entrants and players. At present, Germany with its well-developed engineering industry represents a broad space for research of internationalization process in its different forms, as well as can show both successful and negative results of foreign market entries.
This thesis work is focusing on the optimization and improvement of IP network and IP transit operations and strategy as well as service offerings. Therefore, this thesis tries to give suggestions at different areas of engineering, business, strategy and operational contexts. This thesis is written in English, as this topic itself is mainly handled in English language too. The first part will try to identify and evaluate methods which are helpful to improve the practical work which will be focused in the second part of this work.
The subject of the following paper is the mental well-being of employees at their work and how the leader can improve this well-being using positive psychology. The paper is compilatory in nature because it uses research and literature of experts to analyse how employee mental well-being can be further stimulated. The expert literature is used to present tools, but also to demonstrate the effectiveness of these tools through real-life case studies and evidence. The paper wishes to inform persons, leaders, and entire organizations how positive psychology can be beneficial to organizational members’ well-being in the long term. Using a compilation of positive psychology literature and reallife case studies’ analysis, the informative purpose of the thesis can be achieved.
In the following study we evaluated capabilities of how a simple autoencoder can be used to trainGeneralized Learning Vector Quantization classifier. Specifically, we proved that the bottlenecks of an autoencoder serve as an "information filter" which tries to best represent the desired output in that particular layer in the statistical sense of mutual information.
Autoencoder model was trained for purely unsupervised task and leveraged the advantages by learning feature representations. As a result, the model got the significant value of the accuracy. Implementation and tuning of the model was carried out using Tensor Flow [1].
An extra study has been dedicated to improve traditional GLVQ algorithm taken from sklearn-lvg [2] using the bottleneck from an autoencoder.
The study has revealed potential of bottlenecks of an autoencoder as pre-processing tool in improving the accuracy of GLVQ. Specifically, the model was capable to identify 75% improvements of accuracy in GLVQ comparing to original one, which has about 62%. Consequently, the research exposed the need for further improvement of the model in the present problem case.
kein Abstract vorhanden
In this work, the task is to cluster microarray gene expression data of the cyanobacterium Nostoc PCC 7120 for detection of messenger RNA (mRNA) degradation patterns. Searched are characteristic patterns of degradation which are caused by specific enzymes (ribonucleases) allowing a further biological investigation regarding biochemical mechanisms. The mRNA degradation is part of the regulation of gene expression because it regulates the amount and longevity of mRNA, which is available for translation into proteins. A particular class of RNA degrading enzymes are exoribonucleases which degrade the molecule from its ends, whereby a degradation from the 5’ end, the 3’ end or from both ends is theoretically possible.
In this investigation, the information about exoribonucleolytic degradation is given in a microarray data set containing gene expression values of 1,251 genes. The data set provides gene expression vectors containing the expression values of up to ten short distinct sections of a gene ordered from the genes 5’ end to its 3’ end. For each gene, expression vectors are available for both nitrogen fixing and non-nitrogen fixing conditions, which have to be considered separately due to biological reasons. Accordingly, after filtering and preprocessing, two datasets for clustering are obtained consisting of 133 ten-dimensional expression vectors. The similarity of the expression vectors is judged by a newly correlation based similarity measure and compared with the results obtained by use of the Euclidean distance. A non-linear transformation of the correlations was applied to obtain a dissimilarity measure. By choice of parameters within this transformation a user specific differentiation between negative and positive correlated gene expression vectors and an adequate adjustment regarding the noise level of gene expression values is possible.
Clustering was performed using Affinity Propagation (AP). The number of clusters obtained by AP depends on the so-called self-similarity for the data vectors. This dependence was used to identify stable cluster solutions by self-similarity control. To evaluate the clustering results, Median Fuzzy c-Means (M-FCM) was used. Further, several cluster validity measures are applied and visual inspections by t-distributed Stochastic Neighbor Embedding (t-SNE) as well as cluster visualization are provided for mathematical interpretation analysis of clusters.
To validate the clustering results biologically, the found data structure is checked for biological adequacy. A deeper investigation into the mechanisms behind mRNA-degradation was achieved by use of a RNA-Seq data set. Contained 40 (base pair) bp long reads for non-nitrogen fixing and nitrogen fixing conditions were assembled using bacteria-specific ab-initio assembly of Rockhopper. Thus, mRNA (transcript)-sequences of the clustered genes are obtained. A further investigation of the untranslated regions (UTRs) is performed here due to the assumption that exoribonucleases recognize specific transcript-sequences outside of the annotated gene regions as their binding sites. These UTRs need to be analyzed regarding sequence similarity using motif-finding algorithms.
Aminoacyl-tRNA synthetases (aaRSs) are key enzymes in the process of protein biosynthesis, charging tRNA molecules with their corresponding amino acid. Whereas adenosine phosphate fixation is common to all aaRSs, recognition of the respective amino acid to ensure correct translation poses a complex task, which is still not understood to its full extent. Using all aaRS structures in the Protein Data Bank (PDB), this thesis reveals further details about the specificitydetermining interactions of each aaRS. Moreover, inspection of the similarities between these enzymes using the structure-derived interaction data reinforces the sequence-based evolutionary trace of aaRSs to a certain degree: The concurrent development of two distinct Classes of aaRS is apparent at functional level, and previously determined evolutionary subclasses coincide altogether with specific aminoacyl recognition in each aaRS Type. Still, discrimination of amino acids in aaRSs involves a multitude of further relevant mechanisms. Eventually, analysis of specificity-relevant binding site interactions sheds light on how aaRS evolved to distinguish different amino acids.
DropConnect (the generalization of Dropout) is a very simple regularization technique that was introduced a few years ago and has become extremely popular because of its simplicity and effectiveness. In this thesis, a suitable architecture for applying DropConnect to Learning Vector Quantization networks is proposed along with a reference implementation and experimental results. Inmany classification tasks, the uncertainty of themodel is a vital piece of information for experts. Methods to extract the uncertainty and stability using DropConnect are also proposed and the corresponding experimental results are documented.
Object detection and classification is active field of research inmachine learning and computervision. Depending on the application there are different limitations to adjust to, but also possibilities to take advantage of. In my thesis, We focus on classification and detection of video sequence during night-time and the proposed method is robust since it does use image thresholding [8] which is commonly use in other methods and the thesis uses histograms of oriented gradients (HOG) [37] as features and support vector machine (SVM) [74] as classifier. It is of great importance that the extracted features from the images should be robust and distinct enough to help the classifier distinguish between high-beam and a low-beam. The classifier is part of the object detection which predicts whether or not a testing image matches one group or the other. In our case that is predicting whether or not an image belongs to high or low-beam sequence.
In this master thesis, we define a new bivariate polynomial which we call the defensive alliance polynomial and denote it by da(G; x; y). It is a generalization of the alliance polynomial and the strong alliance polynomial. We show the relation between da(G; x; y) and the alliance, the strong alliance, the induced connected subgraph polynomials as well as the cut vertex sets polynomial. We investigate information encoded about G in da(G; x; y). We discuss the defensive alliance polynomial for the path graphs, the cycle graphs, the star graphs, the double star graphs, the complete graphs, the complete bipartite graphs, the regular graphs, the wheel graphs, the open wheel graphs, the friendship graphs, the triangular book graphs and the quadrilateral book graphs. Also, we prove that the above classes of graphs are characterized by its defensive alliance polynomial. We present the defensive alliance polynomial of the graph formed of attaching a vertex to a complete graph. We show two pairs of graphs which are not characterized by the alliance polynomial but characterized by the defensive alliance polynomial.
Also, we present three notes on results in the literature. The first one is improving a bound and the other two are counterexamples.
This bachelor thesis examines two main topics: Corporate Social Responsibility and Corporate Philanthropy as an integral part of it. It was written in order to prove the high importance of business philanthropy in today’s global market and to encourage companies to strengthen their CSR policy so as to contribute to the resolution of social problems. This paper reviews the theoretical framework of CSR, its evolution, types and theories relating to Corporate Philanthropy. Also it represents a comparative analysis of successful practices of corporate philanthropy in pharmaceutical and other global industries predominantly in Europe and USA. This work underlines competitive advantages and important socio-economic impact of CP and suggest recommendations for companies in developing their CSR activities. The subsequent paper is based on internet research using articles, presentations, reports and studies, websites and official legal documents.
This study presents an analysis of the coverage made by the journals El País (Spain), Folha de S. Paulo (Brazil) and Süddeutsche Zeitung (Germany) about the protests in Brazil against the 2013 Confederations Cup and the 2014 FIFA World Cup to establish a comparison between them and see which topics were emphasized by the newspapers and which tone they use in their reporting. Based on the research questions, four categories were developed for the analysis of the journals: article structure; topic of the article; actors/group of persons and tone of the reporting, all of them composed by several subcategories. It was concluded that the themes highlighted by the European newspapers were different from those stressed on the Brazilian diary. Nonetheless, all the reviewed newspapers made a neutral coverage of the protests.