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The bachelor thesis is about cis-trans isomerization of Xaa-Pro (Xaa = any amino acid), their quantitative acquisition and the selection of 3D structure information for the prediction with a support vector machine (SVM). The quantitative detection of occurrence of cis-, trans- and cis/trans conformation in membrane proteins will be examined and evaluated. The 3D structure informa-tions include 12 features, the amino acids around proline and are including of proline. These include the inside/outside classification, the real secondary structure, energy consideration, as well as five further amino acid occur properties within a defined radius of the proline. From this information, a data set was created for the SVM. This program is used for the prediction of unknown and known Xaa Pro Isomerisms. The methods for the analysis were implemented with the platform independent programming language Java. Two programs have emerged from the work to a Xaa PIPT for the quantitative detection and extracting structural information and m Xaa-PIPT to the pure prediction of Xaa-Pro isomerism in protein structures. 389 Membrane proteins from the PDB (Protein Data Bank) served as a basis. The data were also statistically analysed and evaluated.
In this work a new method for the prediction of the Xaa-proline (where Xaa is any amino acid) cis/trans isomerization was investigated. By extraction of twelve structural features (real secondary structure, inside/outside classification, properties of the environment around proline and proline itself) a support vector machine (SVM) based prediction approach was evolved. The Java software Xaa-PIPT for structural feature extraction was developed. Based on 4397 (2199 cis and 2198 trans) prolines extracted from non-redundant, globular proteins a classifier was trained using the radial basis function (RBF) kernel. In ten-fold cross-validation it achieved an accuracy of 70.0478 % and a Matthews correlation coefficient (MCC) of 0.4223, a sensitivity of 0.5433 and a specificity of 0.8576. Based on this classifier a lightweight and easy-to-use Java software tool, called m Xaa-PIPT, for the prediction of the Xaa-proline cis/trans isomerization was devel-oped. It was shown that there are correlations between the proline surrounding environment and the isomerization state. m Xaa-PIPT can be used for the evaluation of low-resolution protein structures and theoretical models to improve their quality by the prediction of the Xaa-proline isomerization.
After the expression of the titin-Hsp27-construct with the following purification supplies no satisfied results which makes the realization of the atomic force microscopy not possible. The devel-opment of the structure model by using different bioinformatic methods can establish a model for the protein sequence. As bioinformatic methods the template search by different BLAST runs and free available software like SwissModel, Pcons, ModWeb and other tools are used. Nevertheless, the generated model is not the native conformation and has to be analyzed with other software until a stable conformation of the structure can be predicted. Depending on the time which is provided the generated model is a good approach for the aim this master thesis has.
This thesis looks at Customer Relationship Management in a different way. In order to identify factors that influence the acceptance of one of its components – the analytical CRM – it focuses on theopinion of the company’s employees. The objective of this thesis is to identify factors that positvely influence the acceptance of analytical Customer Relationship Management within organizations.
This paper explores the origins of Maori images in New Zealand film history. Discussing the history of Maori and their society brings us closer to a, once almost extinct, race and its struggle for self-representation and self-governance. By taking an in-depth look at New Zealands film history we get to understand how Maori were the subject of the earliest films and at what time they started making their own films. Combining those elements gives us the opportunity to understand how early images of Maori were created by Pakeha directors. By looking at different films throughout film history shows how Maori images evolved in time, especially when Maori started depicting themselves. This paper not only answers questions about Maori images in film but also tries to make people realise what odds Maori had to overcome in their daily struggle for selfdetermination.
This feasibility study shows possibilities, how logistical concepts can be
improved or reorganized. Therefore, the assambly line for hydraulic blocks at
Bosch Rexroth Changzhou is checked and new ideas are shown. To ensure
comparability, three different cases are considered. Based on this evaluation,
recommendations for further development are displayed.
Die vorliegende Arbeit befasst sich mit der Leistungsmessung während der Strategieentwicklung im Bereich des Einkaufs am Beispiel DANIELI Österreich. Das Hauptziel ist es, dass System von Danieli Österreich darzustellen, um ein Verständnis der Leistungsmessung in der Praxis zu generieren. Die draus erworbenen Kenntnisse sollen weiterführend in einer Analyse dazu dienen, um die tatsächlichen Einsparung in diesen Ländern aufzuzeigen. Aufgrund Vorgaben der Geschäftsführung ist DANIELI Österreich gezwungen 20% seines Einkaufsvolumens im ehemaligen Jugoslawien einzukaufen, weshalb Möglichkeiten sowie Risiken in den Ländern Bosnien und Herzegowina, Serbien und Kroatien dargestellt werden, um die Einkaufsstrategie zu optimieren.
Different small molecule kinase inhibitors, which have an influence on cell growth, proliferation and cell survival were tested alone and in combination with Erlotinib in the Erlotinib-resistant non-small cell lung cancer cell line PC-9ER and Cisplatin in the K-Ras mutant cell line H358. The aim was to find out, which combinations produce the best antiproliferative effects in non-small cell lung cancer cell lines.
The larval zebrafish mutant Knörf has got a not yet identified gen, which is lethal after 14 dpf in a homozygous state. The mutation courses various degenerations and the loss of the regeneration ability. One of these degenerations was first discovered in the retina by a histological section. The mutants retinas show gaps in the IPL at 7 and 8 dpf which number increases during the maturation of the larva. In recent studies a pax 6 staining was performed, which showed that amacrine cells areaffected. Different types of amacrine cells were tested and it was shown that the parvalbuminergic amacrine cells disappear. The staining was performed in a time course. At 5 dpf is no difference between the number of parvalbuminergic amacrine cells in siblings and mutants but then the degeneration starts. At 2 dpa there is thefirst significant difference which increases at later stages and leads nearly to a full disappearance of these cells in the eye. Parvalbumin is not only present in the retina, therefore the brain as another central nervous system structure was examined. In the telencephalon these cells disappear already at 2 dpa. The parvalbuminergic cells are also present in the skeletal muscle of the tail. Here the degeneration starts approximately at the half of the tail and intensifies to distal areas. It was shown, that parvalbuminergic cells in the muscle disappear until 4dpa. The role of parvalbumin is seemed in the binding ofcalcium and therefore it supports the adjustment of the resting potential after an excitation in the central nervous system. In muscles it assists in the slowing of relaxing after a contraction of a muscle.