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Gold cyanidation is a process by which gold is removed from low-grade ore. Due to its efficiency it has found widespread application around the world, including Peru. The process requires free cyanide in high concentration. After the gold extraction is completed, free cyanide as well as metal cyanide complexes remain in the effluent of gold mines and refineries. Often these effluents are kept in storage ponds where they pose considerable risk to health and environ-ment. Thus, it is preferable to degrade cyanide to minimize the risk of exposure. In the context of this thesis cyanide degradation was explored in a UV-light based prototype. Degradation with a combination of hydrogen peroxide and UV-light has proven to be very effective at degrading cyanide concentrations of 100 mg/L and 1000 mg/L. Furthermore, the presence of ammonia as a degradation product could also be confirmed. Membrane distillation may provide an alternative to cyanide destruction in the form of cyanide recovery. Promising results were gathered from several membrane experiment.
Footage of organoids taken by means of fluorescence microscopy and segmented as well as triangulated by image analysis software like LimeSeg and Mastodon often needs to be visualized in aesthetic manner for presentation of the results in scientific papers, talks and demonstrations. The goal of this work was to create a simple to use addon “Biobox” for the open source 3D – visualization package “Blender” which would allow to import triangulated 3D data with animation over time (4D), produced by image analysis software, and optimize it for efficient usage. ”Biobox” offers several visualization tools for the creation of rendered images and animation videos by biologists.
The optimization of imported data was performed by using Blender intern modifiers. The optimized data can then be visualized by using several tools built for visualizing the organoid in frozen, animated and semi-transparent manners. A dynamic link for object selection and dynamic data exchange between Blender and Mastodon was developed. Additionally, a user interface was developed for manual correction errors of segmentation and steering the object detection algorithms of LimeSeg. The benchmark of the developed addon “Biobox” was performed on real scientific data. The benchmark test demonstrated that developed optimization result in significant (~5 fold) decrease of RAM usage and acceleration of visualization more than 160 times.
Robust soft learning vector quantization (RSLVQ) is a probabilistic approach of Learning vector quantization (LVQ) algorithm. Basically, the RSLVQ approach describes its functionality with respect to Gaussian mixture model and its cost function is defined in terms of likelihood ratio. Our thesis work involves an approach of modifying standard RSLVQ with non-Gaussian density functions like logistic, lognormal, and Cauchy (referred as PLVQ). In this approach, we derive new update rules for prototypes using gradient of cost function with respect to non-Gaussian density functions. We also derive new learning rules for the model parameters like s and s, by differentiating the cost function with respect to parameters. The main goal of the thesis is to compare the performance results of PLVQ model with Gaussian-RSLVQ model. Therefore, the performance of these classification models have been tested on the Iris and Seeds dataset. To visualize the results of the classification models in an adequate way, the Principal component analysis (PCA) technique has been used.
This paper examines the communication channels used by innovation projects at the ProtoSpace Hamburg, when engaging with stakeholders, and tries to answer the thesis question whether new media channels improve the chances of success for innovation projects, when used for this communication. Expert interviews with eight experts in com-munication, innovation and stakeholder management were conducted and then analyzed through the application of Mayring´s qualitative content analysis, in order to answer the posed question.
In this thesis two novel methods for removing undesired background illumination are de-veloped. These include a wavelet analysis based approach and an enhancement of a deep learning method. These methods have been compared with conventional methods, using real confocal microscopy images and synthetic generated microscopy images. These synthetic images were created utilizing a generator introduced in this thesis.
RNA tertiary contact interactions between RNA tetraloops and their receptors stabilize the folding of ribosomal RNA and support the maturation of the ribosome. Here we use FRET assisted structure prediction to develop structural models of two ribosomal tertiary contacts, one consisting of a kissing loop and a GAAA tetraloop and one consisting of the tetraloop receptor (TLR) and a GAAA tetraloop. We build bound and unbound states of the ribosomal contacts de novo, label the RNA in silico and compute FRET histograms based on MD simulations and accessible contact volume (ACV) calculations. The predicted mean FRET efficiency from molecular dynamics (MD) simulations and ACV determination show agreement for the KL-TLGAAA construct. The KL construct revealed too high FRET efficiency and artificial dye behavior, which requires further investigation of the model. In the case of the TLR, the importance of the correct dye and construct parameters in the modeling was shown, which also leads to a renewed modeling. This hybrid approach of experiment and simulation will promote the elucidation of dynamic RNA tertiary contacts and accelerate the discovery of novel RNA interactions as potential future drug targets.
The following thesis contains a detailed business plan of a formula student combustion racecar. This includes the evaluating of existing knowledge about the car combined with required information about the market and seed capital. Subsequently the already presented plan is described with the interpretation for future business plans. In this connection the acceptance of electro mobility shall be evaluated and first ideas for the presentation of an electric car shall be created.
The research of this thesis aims to analyze how a specific CSR approach from the Adidas Group on sustainability is perceived globally based on an analysis of the movements on the stock market combined with a sentiment analysis of tweet activities on Twitter. The thesis analyzed both positive feedback and critic from customers worldwide regarding the approach and other initiatives from the Adidas Group and their partner Parley for the Oceans, a non-governmental organization working towards a more sustainable world.
The occurence of prostate cancer (PCa) has been consistently rising since three decades and remains the third leading cause of cancer-related deaths after lung and bowel cancer in Germany. Despite of new methods of early detection, such as prostate-specific antigen (PSA) testing, it persists to be the most common cancer in german men with over 63,400 new diagnoses in Germany every year and exhibits high prevalence in other countries of Northern andWestern Europe as well [64]. Men over the age of 70 are most commonly affected by the lethal disease, whereas an indisposition before 50 is rare. The malignant prostate tumor can be healed through operation or irradiation while the cancer hasn’t reached the stage of metastasis in which other therapeutic methods have to be employed [14] [15]. In the metastatic phase, the patient usually exhibits symptoms when the tumors size affects the urethra or the cancer spreads to other tissue, often the bones [16].
The high prevalence of this disease marks the importance of further research into prognosis and diagnosis methods, whereby identification of further biomarkers in PCa poses a major topic of scientific analysis. For this task, the effectiveness of high-throughput RNA sequencing of the transcriptome (RNA molecules of an organism or specific cell type) is frequently exploited [66]. RNA sequencing or RNA-Seq in short, offers the possibility of transcriptome assessment, enabling the identification of transcriptional aberrations in diseases as well as uncharacterized RNA species such as non-coding RNAs (ncRNAs) which remain undetected by conventional methods [49]. To alleviate interpretation of the sequenced reads they are assembled to reconstruct the transcriptome as close to the original state as possible, thus enabling rapid detection of relevant biomolecules in the data [49]. Transcriptomic studies often require highly accurate and complete gene annotations on the reference genome of the examined organism. However, most gene annotations and reference genomes are far from complete, containing a multitude of unidentified protein-coding and non-coding genes and transcripts. Therefore, refinement of reference genomes and annotations by inclusion of novel sequences, discovered in high quality transcriptome assemblies, is necessary [24].
Glycans play an important role in the intracellular interactions of pathogenic bacteria. Pathogenic bacteria possess binding proteins capable of recognizing certain sugar motifs on other cells, which are found in glycan structures. Artificial carbohydrate synthesis allows scientists to recreate those sugar motifs in a rational, precise, and pure form. However, due to the high specificity of sugar-binding proteins, known as lectins, to glycan structures, methods for identifying suitable binding agents need to be developed. To tackle this hurdle, the Fraunhofer Institute for Cell Therapy and Immunology (Fraunhofer IZI) and the Max-Planck Institute of Colloids and Interfaces (MPIKG) developed a binding assay for the high throughput testing of sugar motifs that are presented on modular scaffolds formed by the assembly of four DNA strands into simple, branched DNA nanostructures. The first generation of this assay was used in combination with bacteria that express a fluorescent protein as a proof-of-concept. Here, the assay was optimized to be used with bacteria not possessing a marker gene for a fluorescent protein by staining their genomic DNA with SYBR® Green. For the binding assay, DNA nanostructures were combined with artificially synthesized mannose polymers, typical targets for many lectins on the surface of bacteria, presenting them in a defined constellation to bind bacteria strongly due to multivalent cooperativity. The testing of multiple mannose polymers identified monomeric mannose with a 5’-carbon linker and 1,2-linked dimeric mannose with linker as the best binding candidates for E. coli, presumably due to binding with the FimH protein on the surface. Despite similarities between the FimH proteins of E. coli and K. pneumoniae, binding was only observed between E. coli and the different sugar molecules on DNA structures. Furthermore, the degree of free movement seemed to affect the binding of mannose polymers to targeted proteins, since when utilizing a more flexible DNA nanostructure, an increase in binding could be observed. An alternative to the simple DNA nanostructures described above is the use of larger, more complex DNA origami structures consisting of several hundred strands. DNA origami structures are capable of carrying dozens of modifications at the same time. The results for the DNA origami structure showed a successful functionalization with up to 71 1,2-linked dimeric mannose with linker molecules. These results point towards a solution for the high-throughput analysis of potential binding agents for pathogenic bacteria e.g. as an alternative treatment for antibiotic-resistant.