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Genetic sex determination of ancient DNA samples based on one simple mathematical algorithm, which considers the number of mapped reads on autosomal, X, and Y chromosomes. The algorithm is implemented in one command line tool - SiD. SiD is used to deter-mine the sex of 16 samples, which have been shotgun sequenced and captured with a 1240k panel.
This thesis provides an overview of Generation Z with a focus on Mittweida University of Applied Sciences students. It explores the general issues of students' behavior in life, as well as their attitudes toward the financial and banking sectors. It also examines the German banking market, its strengths and weaknesses in attracting new clients. At the end, possible strategies for the development of the bank in terms of attractiveness for young people are provided.
In this work, a transgenic zebrafish line that expresses the fluorophore dsRed under the endogenous zebrafish cochlin promotor is supposed to be established, using the CRISPR/Cas9 system. dsRed was cloned into a pBluescript vector, followed by the cloning of the cochlin locus into this vector. This bait construct was then supposed to be micro injected into wild type AB zebrafish embryos. The micro injection of Cas9 mRNA, single guide RNA and a bait construct was practiced with the tyrosinase gene, which was disrupted using CRISPR/Cas9.
Simulating complex physical systems involves solving nonlinear partial differential equations (PDEs), which can be very expensive. Generative Adversarial Networks (GAN) has recently been used to generate solutions to PDEs-governed complex systems without having to numerically solve them.
However, concerns are raised that the standard GAN system cannot capture some important physical and statistical properties of a complex PDE-governed system, along side with other concerns for difficult and unstable training, the noisy appearance of generated samples and lack of robust assessment methods of the sample quality apart from visual examination. In this thesis, a standard GAN system is trained on a data set of Heat transfer images. We show that the generated data set can capture the true distribution of training data with respect to both visual and statistical properties, specifically the vertical statistical profile. Furthermore, we construct a GAN model which can be conditioned using variance-induced class label. We show that the variance threshold t = 0. 01 constructs a good conditional class label, such that the generated images achieve 96% accuracy
rate in complying with the given conditions.
The epithelial membrane proteins (EMP1-3), which belong to the family of peripheral myelin proteins 22-kDa (PMP22), are involved in epithelial differentiation. EMP2 was found to be a downstream target gene of the tumor suppressor gene HOPX, a homeobox-containing gene. Additionally, a dysregulation of EMP2 has been observed in various cancers, but the function of EMP2 in human lung cancer has not yet been clarified.
In this study, a real-time RT-PCR, Western blot and cytoblock analysis were performed to analyze the expression of EMP2. Gain-of-function was achieved by stable transfection with an EMP2 expression vector and loss-of-function by siRNA knockdown. Stable transfection led to overexpression of EMP2 at both mRNA and protein levels in the transfected cell lines H1299 and H2170.
Functional assays including proliferation, colony formation, migration and invasion assays as well as cell cycle analyzes were performed after stable transfection and it was found that the ectopic EMP2 expression resulted in a reduced cell proliferation, migration and invasion as well as a G1 cell cycle arrest. After the EMP2 gene was silenced by the siRNA knockdown, inhibition of the cell invasive property was observed. These phenomena were accompanied by reduced AKT, mTor and p38 activities.
Taken together, the data suggest that the epithelial membrane protein 2 (EMP2) is a tumor suppressor and exerts its tumor suppressive function by inhibiting AKT and MAPK signaling pathways in human lung cancer cells.
This feasibility study shows possibilities, how logistical concepts can be
improved or reorganized. Therefore, the assambly line for hydraulic blocks at
Bosch Rexroth Changzhou is checked and new ideas are shown. To ensure
comparability, three different cases are considered. Based on this evaluation,
recommendations for further development are displayed.
The aim of this bachelor thesis was to establish extracytoplasmic function (ECF) σ factors as synthetic genetic regulators for biotechnological and synthetic biology applications in the new emerging model organism Vibrio natriegens. Therefore, synthetic genetic circuits were engineered on plasmids as test set-up for the investigated ECFs and their target promoters. The resulting plasmid library consisted of the reporter plasmids with the target promoter, fused to a lux cassette, a set of high-copy ECF plasmids and a backup set of lower-copy ECF plasmids. First, the high-copy plasmids were transformed in V. natriegens to test them for their functionality upon different inducer levels, which yielded good inducibility for few, but showed too high ECF-expression in most strains. For this reason, the set of lower copy plasmids was used for combinatorial co-transformation, to investigate the ECFs for their cross-talk to unspecific ECF target promoters. The switching to the lower-copy plasmid-set seemed to be partly helpful, while still much room for fine-tuning of the circuits remains. The knowledge gained can be used to achieve higher success rates when engineering synthetic circuits for various applications in V. natriegens, by using the ECFs here recommended as suitable synthetic genetic regulators.
This Bachelor thesis provides an experimental validation of the “si-Fi” software, which was designed for RNAi off-target searches and silencing efficiency predictions. The experimental approach is based on using synthetic DNA as RNAi-target as well as RNAi-trigger sequence. The data was generated by two different types of experiments using a transient gene silencing system in bombarded barley epidermal cells. The efficiency of RNAi was estimated by scoring the effect of silencing of the susceptibility-related gene Mlo on resistance of transformed cells to the powdery mildew fungus Blumeria graminis f. sp. hordei by observing reduction of fluorescent signals coming from an RNAi target fused to the green fluorescent protein. The aim of this work was a comparison between in silicio prediction of RNAi efficiency and off-target effects in barley and experimental data.
Evolution of Game Music : a look at characteristic elements of music in video games across time
(2015)
Music in video games is a subject worth regarding. Nevertheless, it isn't totally explored yet. This thesis shows and explains characteristics every video game music has and explores them regarding the developments in the history of video games. The thesis contains information about video games that inspired the musical evolution of games or that contain music as key part, as well as information about technological advances that influenced the musical evolution.
In this work, the task is to cluster microarray gene expression data of the cyanobacterium Nostoc PCC 7120 for detection of messenger RNA (mRNA) degradation patterns. Searched are characteristic patterns of degradation which are caused by specific enzymes (ribonucleases) allowing a further biological investigation regarding biochemical mechanisms. The mRNA degradation is part of the regulation of gene expression because it regulates the amount and longevity of mRNA, which is available for translation into proteins. A particular class of RNA degrading enzymes are exoribonucleases which degrade the molecule from its ends, whereby a degradation from the 5’ end, the 3’ end or from both ends is theoretically possible.
In this investigation, the information about exoribonucleolytic degradation is given in a microarray data set containing gene expression values of 1,251 genes. The data set provides gene expression vectors containing the expression values of up to ten short distinct sections of a gene ordered from the genes 5’ end to its 3’ end. For each gene, expression vectors are available for both nitrogen fixing and non-nitrogen fixing conditions, which have to be considered separately due to biological reasons. Accordingly, after filtering and preprocessing, two datasets for clustering are obtained consisting of 133 ten-dimensional expression vectors. The similarity of the expression vectors is judged by a newly correlation based similarity measure and compared with the results obtained by use of the Euclidean distance. A non-linear transformation of the correlations was applied to obtain a dissimilarity measure. By choice of parameters within this transformation a user specific differentiation between negative and positive correlated gene expression vectors and an adequate adjustment regarding the noise level of gene expression values is possible.
Clustering was performed using Affinity Propagation (AP). The number of clusters obtained by AP depends on the so-called self-similarity for the data vectors. This dependence was used to identify stable cluster solutions by self-similarity control. To evaluate the clustering results, Median Fuzzy c-Means (M-FCM) was used. Further, several cluster validity measures are applied and visual inspections by t-distributed Stochastic Neighbor Embedding (t-SNE) as well as cluster visualization are provided for mathematical interpretation analysis of clusters.
To validate the clustering results biologically, the found data structure is checked for biological adequacy. A deeper investigation into the mechanisms behind mRNA-degradation was achieved by use of a RNA-Seq data set. Contained 40 (base pair) bp long reads for non-nitrogen fixing and nitrogen fixing conditions were assembled using bacteria-specific ab-initio assembly of Rockhopper. Thus, mRNA (transcript)-sequences of the clustered genes are obtained. A further investigation of the untranslated regions (UTRs) is performed here due to the assumption that exoribonucleases recognize specific transcript-sequences outside of the annotated gene regions as their binding sites. These UTRs need to be analyzed regarding sequence similarity using motif-finding algorithms.